Documentation

Complete guide to Flash-P: agents, scripts, configuration, and extension.

Getting Started

Use Flash-P

Two ways to run Flash-P — agent folder or desktop app

Pipeline Overview

Architecture and data flow

Agents

Curator Agent

Literature mining and edge extraction

Literature Review Judge Agent

Independent audit of curated edges before network construction

Builder Agent

Network construction (the brain)

Builder Judge Agent

Biological quality review of network topology

Perturbation Agent

Perturbation dataset creation

Validator Agent

Validation with comprehensive metrics

Refinement Agent

Iterative improvement with biological reasoning

Reference

Mathematical Foundations

All formulas: algebraic rules, Hill functions, RWR propagation

FAQ

Frequently asked questions