Complete guide to Flash-P: agents, scripts, configuration, and extension.
Overview and setup instructions
Dependencies, subscription setup, environment configuration
Architecture and data flow
Literature mining and edge extraction
Network construction (the brain)
Perturbation dataset creation
Validation with comprehensive metrics
Iterative improvement with biological reasoning
Primary algebraic validation
ODE with Hill functions
Random Walk with Restart
All formulas: algebraic rules, Hill functions, RWR propagation
Network output file structure
Validation output files explained
Frequently asked questions